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Same Database.sqlite3 problem with 10.6.7
Authored by: jfaughnan on Jul 22, '11 08:51:14AM

I had the exact same issue with 10.6.7:

Found this article by searching on the rather unique string:

~/Library/PubSub/Database/Database.sqlite3 vacuum

Really, this hint deserves more prominence.

John Faughnan

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