The Mail Service Administration manual gets it wrong when it tells you how to repair an IMAP database on OS X Server. Here's one "right way" to do it. As root, type:
sudo -u cyrus /usr/bin/cyrus/bin/reconstruct -r -f user/xxx
where xxx is the name of the user whose IMAP database you want to rebuild. This differs not only from what it says in the manual, but from standard Cyrus behavior (which would use user.xxx instead of user/xxx).
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